Package: clintools 0.9.10.6

clintools: Tools for Clinical Research

Every research team have their own script for data management, statistics and most importantly hemodynamic indices. The purpose is to standardize scripts utilized in clinical research. The hemodynamic indices can be used in a long-format dataframe, and add both periods of interest (trigger-periods), and delete artifacts with deleter-files. Transfer function analysis (Claassen et al. (2016) <doi:10.1177/0271678X15626425>) and Mx (Czosnyka et al. (1996) <doi:10.1161/01.str.27.10.1829>) can be calculated using this package.

Authors:Markus Harboe Olsen [cre, aut], Christian Riberholt [ctb], Ronan Berg [ctb], Kirsten Moeller [ctb], Janus Christian Jakobsen [ctb], Aksel Karl Georg Jensen [ctb]

clintools_0.9.10.6.tar.gz
clintools_0.9.10.6.zip(r-4.7)clintools_0.9.10.6.zip(r-4.6)clintools_0.9.10.6.zip(r-4.5)
clintools_0.9.10.6.tgz(r-4.6-any)clintools_0.9.10.6.tgz(r-4.5-any)
clintools_0.9.10.6.tar.gz(r-4.7-any)clintools_0.9.10.6.tar.gz(r-4.6-any)
clintools_0.9.10.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
clintools/json (API)
NEWS

# Install 'clintools' in R:
install.packages('clintools', repos = c('https://lilleoel.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lilleoel/clintools/issues

Datasets:

On CRAN:

Conda:

4.11 score 2 stars 2 scripts 316 downloads 26 exports 167 dependencies

Last updated from:25b8baac5d. Checks:7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING218
source / vignettesOK219
linux-release-x86_64WARNING195
macos-release-arm64WARNING178
macos-oldrel-arm64WARNING102
windows-develWARNING149
windows-releaseWARNING144
windows-oldrelWARNING139
wasm-releaseOK158

Exports:calcrelcdm.figcdm.misscdm.miss.stratacdm.statusclinmoncomparereldanishcprdilationsiscuslibrariesmetszortablePLRquestionairequietlyread.openclinicarecolrowMediansrrGcompsavenprintsRCTsubgroupstblTFAwr.fig

Dependencies:abindaskpassbackportsbase64encbayestestRbitbit64blobbootbroombslibcachemcallrcarcarDatacellrangerclicliprcolorspacecommonmarkconflictedcorrplotcowplotcpp11crayoncurldata.tabledatawizardDBIdbplyrDerivdigestdoBydplyrdtplyrevaluatefarverfastmapfontawesomeforcatsforecastFormulafracdifffsgarglegenericsggfittextggplot2ggpubrggrepelggsciggsignifggtextgluegoogledrivegooglesheets4gridExtragridtextgtablehavenhighrhmshtmltoolshttridsinsightirrisobandjpegjquerylibjsonliteknitrlabelinglatticelifecyclelitedownlme4lmtestlpSolvelubridatemagrittrmarkdownMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamodelrnlmenloptrnnetnumDerivopensslotelpanderparameterspatchworkpbkrtestpillarpkgconfigplyrpngpolynomprettyunitspROCprocessxprogresspspurrrquantregR6raggrappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreadrreadxlreformulasrematchrematch2reprexrjsonrlangrmarkdownrstatixrstudioapirvestS7sassscalesselectrshadessignalSparseMstringistringrsurvivalsyssystemfontstextshapingtibbletidyrtidyselecttidyversetimechangetimeDatetinytextzdburcautf8uuidvctrsviridisLitevroomWinRatiowithrxfunxml2yamlzoo

Readme and manuals

Help Manual

Help pageTopics
Calculation of reliability (calcrel)calcrel
Central data monitoring to assess deviations (cdm.fig)cdm.fig
Quiet any output (cdm.miss)cdm.miss
Quiet any output (cdm.miss)cdm.miss.strata
Trial status for central data monitoring (cdm.status)cdm.status
Hemodynamic Indices Calculated From Clinical Monitoring (clinmon)clinmon
Compare measures of reliability (comparerel)comparerel
Danish CPR number to birthday and sex (danishcpr)danishcpr
Test-data - 1000 Hzdf.data1000
Test-deleterdf.deleter
Assess dilations from 'PLR3000'-output.dilations
ISCUSFlex-values to dataframe (iscus)iscus
Load or install multiple packages (libraries)libraries
Calculation of MetS-Z score (metsz)metsz
Logistic regression table with Odds ratio (ortable)ortable
NeurOpticsTM PLR-3000 or PLR-4000 pupillometer file to dataframe (PLR)PLR
Calculate scores from questionaires (questionaire)questionaire
Quiet any output (quietly)quietly
Create dataframe from Open Clinica (read,openclinica)read.openclinica
Reorder column (recol)recol
find median of rows similar to rowMeans (rowMedians)rowMedians
Relative risk derived by G-computation (rrGcomp)print.rrGcomp rrGcomp
Save and print (savenprint)savenprint
simulated Randomised Clinical Trial (sRCT)sRCT
Create subgroup analysis table (subgroups)subgroups
Create a table (tbl)tbl
Test-data - 10 Hzdf.data10 testdata10
Transfer function analysis of dynamic cerebral autoregulation (TFA)TFA
TFA sample datatfa_sample_data
TFA sample data - 1tfa_sample_data_1
TFA sample data - 2tfa_sample_data_2
Win Ratio Plotwr.fig