questionaire
cdm.fig
and cdm.miss
tbl
to include Cox proportional hazards modelcomparerel
to compare reliability estimatescalcrel
to use confint
for SRD instead of confint.default
t.test
to calcrel
for internal consistency.tbl
to include both summary statistics and statistical analyses.cdm.miss
and cdm.fig
questionaire
calcrel
to calculate reliability estimates.PLR3000
to accept recordings without marking.dynamic_artefacts
setting to the dilations
function and documentation. Used to dynamically assess artefacts. Also renamed artefacts
to static_artefacts
.resting_delay
setting to the dilations
function and documentation. Used to assess delay the subsequent period for assessment.dilations
function and documentation. Used to assess dilations from PLR3000
.sRCT
function and documentation. Now applies random effect of site, and add relative risks together using ln-number instead of absolute numbersclinmon
documentationrrGcomp
clinmon
documentationPLR3000
Added the sRCT
-function to generate simulated randomized clinical trials. Much more work to add
Added the rrGcomp
-function to calculate relative risk using G-computation from an individual participant dataframe.
Added the PLR3000
-function to convert data extracted from NeurOptics PLR-3000 to a long format dataframe.
iscus
-function to convert XML microdialysis data to a dataframe.TFA
and clinmon
functions, especially the overlapping functionality did not produce Mx, PRx or CPPopt.Changed name from clinmon to clintools to allow for inclusion of other function than only hemodynamic indices.
Based on the matlab-script created by David Simpsons in 2015 the TFA
-function have been added to calculate the transfer function analysis.
The test data from 2015 has also been addedd data(tfa_sample_data)
, data(tfa_sample_data1)
, and data(tfa_sample_data2)
to underline the script generates the same results as the Matlab-script.
Added the ortable
-function which generates an Odds ratio table from a logistic regression glm
.
Simplified the package, to calculate all the indices in clinmon()
. clinmon()
uses a continuous recording and returns a dataframe with hemodynamic indices for every period, epoch or block depending on the chosen output. Includes COest
, CPPopt
, CVRi
, Dx
, Mx
, PI
, PRx
, PWA
, RI
, and Sx
(see details).
Test data set is added to the package in two resolutions 1000 Hz, and 10 Hz. The corresponding deleter-file is also added.
This is the first version of the package put on CRAN
Correlation coefficient based indices Dx
, Sx
, Mx
and PRx
are functional, and validated through ICM+
Furthermore indices such as CVRi
, PI
, RI
, PWA
, and CO
are functional.
CPPopt
and TFA
will be added in future versions